GeneMark.hmm Eukaryotic Instructions

Eukaryotic GeneMark.hmm version 3 Alexandre Lomsadze, Vardges Ter-Hovhannisyan, Yury Chernoff1 and Mark Borodovsky Gene identification in novel eukaryotic genomes by self-training algorithm Nucleic Acids Research (2005) 33, pp 6494-6506

Eukaryotic GeneMark.hmm version 3 - fungal Vardges Ter-Hovhannisyan, Alexandre Lomsadze, Yury Chernoff1 and Mark Borodovsky Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training Genome Research (2008) 18, pp 1979-1090

This webpage provides access to gene prediction program GeneMark.hmm eukaryotic (version 3.32) and to the sets of pre-computed species specific algorithm parameters (model parameters). The list of currently supported species is available here . These parameter sets were derived by application of one of the following training algorithms: GeneMark-ES, GeneMark-ET or supervised training algorithm.

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